PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44871.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 474aa    MW: 52485.9 Da    PI: 6.1216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44871.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l d+vk++G g+W+++ +  g+ R++k+c++rw ++l
       KHN44871.1 25 KGPWTPEEDAILMDYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHL 72
                     79******************************99**********9986 PP

2Myb_DNA-binding48.52e-1578121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++ ++d++ +lG++ W++ a+ ++ gRt++++k++w++
       KHN44871.1  78 KGAFSQEEEQVIIDLHSKLGNK-WARMAAQLP-GRTDNEIKNFWNT 121
                      799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3852072IPR017930Myb domain
SuperFamilySSF466894.49E-3022119IPR009057Homeodomain-like
SMARTSM007176.3E-152474IPR001005SANT/Myb domain
PfamPF002491.3E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242679IPR009057Homeodomain-like
CDDcd001672.23E-122772No hitNo description
PROSITE profilePS5129424.77173127IPR017930Myb domain
SMARTSM007172.5E-1477125IPR001005SANT/Myb domain
PfamPF002499.1E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2580126IPR009057Homeodomain-like
CDDcd001673.68E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MARTVSNSNE TAAKEEGEVR NGVRKGPWTP EEDAILMDYV KKHGEGNWNS VQKNSGLLRC  60
GKSCRLRWAN HLRPNLKKGA FSQEEEQVII DLHSKLGNKW ARMAAQLPGR TDNEIKNFWN  120
TRMKRRQRAG LPLYPPEVHA EATSYLLQHH RYLEQQQQQQ PHSSSSFSLL LSSCYPNKLN  180
DPNQTHHHSN ANLLQSQPDH SANRYINPSQ QFKFSNENSG SNGNFAFPLS PLSPYGSSSS  240
TLLNHSLGGG DHGFIAGSPY EPFSLVQGST TDISSNQTPT PASSYASGVD GLMGASSMVN  300
NNNNNNDYYE VAPLSPPQGN SGLLDALVME AQGLSHNEKS KSEEDPNLAG KLSCKRKKME  360
YAEEGGTVPA MKKNSGNSTT NESQRDDDIS SSQLAKGKEQ IGEDPLEEMN GMDDDLVSLL  420
NHFPLEMPMP EWYRRGENQS LGLENQPKAS LPDPADQEDA WTLGTCWNNM PRIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28251267107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539501.20.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A0B2SDQ30.0A0A0B2SDQ3_GLYSO; Transcription factor GAMYB
STRINGGLYMA12G31950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-70myb domain protein 101
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]